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Supported file formats
- Carl Zeiss LSM
- Olympus FV1000 OIF
- Leica SP2 TXT and SP5 LIF
- OME-TIFF (read & write)
- MRC
- Multipage TIFF and single/series of TIFF, PNG and JPEG images (read & write)
- VTK XML (write)
- BXD & BXC internal formats
Image viewing modes (with time series support)
- Slices
- Gallery
- Orthographic sections
- Maximum and average intensity projection
- 3D rendering
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3D modules
- Software ray casting and OpenGL texture mapping
- Surface rendering
- Ortographic sections
- Visualization of motion tracks
- Clipping with plane and box
- Warping
- PDB visualization
- Axes, angle and distance measurements
Animator
- Create your own videos with the Animator
- Camera path editing
- Keyframes
- 4D support
Batch processor
- Support for multiple parallel processing pipelines
- Support almost any operation in BioImageXD
- Produces result images and aggregates selected result statistics into spreadsheets for further processing
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Image processing
- Color, brightness, contrast and gamma adjustment
- Noise filtering
- Registration methods
- Deconvolution
- Fluorescence bleach correction
- Color and intensity transfer function adjustments
Quantitative analysis
- Colocalization analysis (voxel and object)
- 3D segmentation methods
- Object analysis
- Motion tracking
- Internalization analysis
- ROI analysis
- FRAP analysis
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Features